Package: mizer
Title: Dynamic Multi-Species Size Spectrum Modelling
Date: 2026-06-24
Type: Package
Description: A set of classes and methods to set up and run
        multi-species, trait based and community size spectrum
        ecological models, focused on the marine environment.
Maintainer: Gustav Delius <gustav.delius@york.ac.uk>
Authors@R: c(person("Gustav", "Delius", email="gustav.delius@york.ac.uk",
                    role=c("cre", "aut", "cph"),
                    comment = c(ORCID = "0000-0003-4092-8228")),
             person("Finlay", "Scott", email="drfinlayscott@gmail.com", 
                    role=c("aut", "cph")),
             person("Julia", "Blanchard", email="julia.blanchard@utas.edu.au",
                    role=c("aut", "cph"),
                    comment = c(ORCID = "0000-0003-0532-4824")),
             person("Ken", "Andersen", email="kha@aqua.dtu.dk",
                    role=c("aut", "cph"),
                    comment = c(ORCID = "0000-0002-8478-3430")),
             person("Richard", "Southwell", email="richard.southwell@york.ac.uk",
                    role=c("ctb", "cph")))
Version: 3.1.0.9000
License: GPL-3
Imports: assertthat, deSolve, dplyr, ggplot2 (>= 3.4.0), ggrepel, grid,
        lubridate, methods, nleqslv, plotly, plyr, progress, Rcpp,
        reshape2, rlang, lifecycle, pak
LinkingTo: Rcpp
Depends: R (>= 3.5)
Suggests: testthat (>= 3.0.0), withr, vdiffr, diffviewer, roxygen2,
        knitr, rmarkdown, quarto, pkgdown, covr, spelling
Collate: 'age_mat.R' 'helpers.R' 'MizerParams-class.R'
        'MizerSim-class.R' 'registerExtensions.R'
        'ArraySpeciesBySize-class.R' 'ArrayTimeBySpecies-class.R'
        'ArrayTimeBySpeciesBySize-class.R'
        'ArrayResourceBySize-class.R' 'generic_methods.R'
        'background.R' 'reproduction.R' 'saveParams.R'
        'species_params.R' 'getRequiredRDD.R' 'setColours.R'
        'setInteraction.R' 'setPredKernel.R' 'setSearchVolume.R'
        'setMaxIntakeRate.R' 'setMetabolicRate.R' 'setMetadata.R'
        'setExtMort.R' 'setExtEncounter.R' 'diffusion.R'
        'second_order_w.R' 'setExtDiffusion.R' 'setReproduction.R'
        'setResource.R' 'setFishing.R' 'setInitialValues.R'
        'setBevertonHolt.R' 'upgrade.R' 'selectivity_funcs.R'
        'pred_kernel_funcs.R' 'resource_dynamics.R'
        'resource_semichemostat.R' 'resource_logistic.R'
        'numerical_methods.R' 'transport.R' 'project_n.R' 'project.R'
        'mizer-package.R' 'project_methods.R' 'rate_functions.R'
        'summary_methods.R' 'indicator_functions.R' 'plots.R'
        'plotBiomassObservedVsModel.R' 'plotYieldObservedVsModel.R'
        'animateSpectra.R' 'newMultispeciesParams.R'
        'wrapper_functions.R' 'newSingleSpeciesParams.R' 'steady.R'
        'extension.R' 'data.R' 'RcppExports.R' 'deprecated.R'
        'get_initial_n.R' 'compareParams.R' 'customFunction.R'
        'manipulate_species.R' 'calibrate.R' 'scaleRates.R' 'match.R'
        'matchGrowth.R' 'steadySingleSpecies.R' 'steadyNewton.R'
        'defaults_edition.R' 'validSpeciesParams.R'
Roxygen: list(markdown = TRUE)
Encoding: UTF-8
LazyData: true
URL: https://sizespectrum.org/mizer/,
        https://github.com/sizespectrum/mizer
BugReports: https://github.com/sizespectrum/mizer/issues
Language: en-GB
RdMacros: lifecycle
VignetteBuilder: knitr, quarto
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
Repository: https://sizespectrum.r-universe.dev
Date/Publication: 2026-07-05 07:23:32 UTC
RemoteUrl: https://github.com/sizespectrum/mizer
RemoteRef: HEAD
RemoteSha: 8aa4a8041632b332133acd9c53f9bd2fe9678848
NeedsCompilation: yes
Packaged: 2026-07-05 09:54:01 UTC; root
Author: Gustav Delius [cre, aut, cph] (ORCID:
    <https://orcid.org/0000-0003-4092-8228>),
  Finlay Scott [aut, cph],
  Julia Blanchard [aut, cph] (ORCID:
    <https://orcid.org/0000-0003-0532-4824>),
  Ken Andersen [aut, cph] (ORCID:
    <https://orcid.org/0000-0002-8478-3430>),
  Richard Southwell [ctb, cph]